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アルカリゲネス科

出典: フリー百科事典『ウィキペディア（Wikipedia）』
アルカリゲネス科
気管支敗血症菌（Bordetella bronchiseptica）の走査型電子顕微鏡画像
分類
ドメイン : 真正細菌
Bacteria
門 : Pseudomonadota門
綱 : ベータプロテオバクテリア綱
Betaproteobacteria
目 : バークホルデリア目
Burkholderiales
科 : アルカリゲネス科
Alcaligenaceae
学名
Alcaligenaceae
De Ley et al. 1986[1]
タイプ属
アルカリゲネス属
Alcaligenes
Castellani and Chalmers 1919[2]
(IJSEMリストに掲載 1980)[3]
下位分類（種）

本文を参照

アルカリゲネス科（ーか、Alcaligenaceae）はPseudomonadota門ベータプロテオバクテリア綱バークホルデリア目の科の一つである。水圏、土壌、人体、及び動物から見出される。ボルデテラ属といったいくつかの種はヒトや動物に対して感染力を示す[4]。

概要

[編集]

直径0.2～1.0μm、長さ0.5～2.6μmの桿菌または球菌である[1]。形態は単細胞、二連、まれに連鎖である。グラム陰性。休止期は確認されていない。周鞭毛によって運動するか、または運動しない（パラ百日咳菌Bordetella parapertussisと百日咳菌Bordetella pertussis）。好気性であり、酸素を最終電子受容体とする厳密に呼吸型の代謝を行う。一部の菌株は、硝酸塩または亜硝酸塩を代替電子受容体として利用し、嫌気的に増殖することができる。最適温度は30～37℃である。コロニーは通常、色素を持たない無色である。ほとんどの種はオキシダーゼ及びカタラーゼ陽性である。リトマスミルクでは塩基性を示す。ゼラチンを加水分解しない。化学有機栄養性である。ほとんどの種は、多種の有機酸とアミノ酸を炭素源として利用する。炭水化物は通常利用しないが、一部の菌株は、d-グルコースとd-キシロースから酸を生成し炭素源として利用する。一部の種はニコチンアミド、有機硫黄化合物（システインなど）、有機窒素化合物（アミノ酸）を要求する。アルカリゲネス属のメンバーは土壌、水、医療現場、およびヒトの臨床材料に存在する。ボルデテラ属の種は呼吸器系の上皮繊毛に局在して増殖し、温血動物に対して病原性を持つ。GC含量は56～70 mol%である。

下位分類（属）

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アルカリゲネス科に含まれる属を以下にまとめる(2024年6月現在)[5]。

IJSEMリストに正式承認された属名

[編集]
Yabuuchi and Yano 1981[6]、修正 Yabuuchi et al. 1998[7] (IJSEMリストに掲載 1998)[8]
Coenye et al. 2005[9] (IJSEMリストに掲載 2005)[10]、修正 Gibello et al. 2009[11] (IJSEMリストに掲載 2009)[12]
Castellani and Chalmers 1919[2] (IJSEMリストに掲載 1980)[3]
Babich et al. 2023[13] (IJSEMリストに掲載 2023)[14]
França et al. 2016[15] (IJSEMリストに掲載 2016)[16]
Xie and Yokota 2005[17] (IJSEMリストに掲載 2006)[18]、修正 Liu et al. 2022[19] (IJSEMリストに掲載 2023)[19]
Whiteson et al. 2014[20] (IJSEMリストに掲載 2014)[21]
Moreno-López 1952[22] (IJSEMリストに掲載 1980)[3]、修正 Von Wintzingerode et al. 2001[23] (IJSEMリストに掲載 2001)[24]
Willems et al. 2002[25] (IJSEMリストに掲載 2002)[26]
Felföldi et al. 2017[27] (IJSEMリストに掲載 2017)[28]
Vaz-Moreira et al. 2011[29] (IJSEMリストに掲載 2011)[30]、修正 Zhang et al. 2012[31] (IJSEMリストに掲載 2012)[32]
Kämpfer et al. 2006[33] (IJSEMリストに掲載 2006)[34]
Li et al. 2019[35] (IJSEMリストに掲載 2020)[36]
Jensen et al. 1960[37] (IJSEMリストに掲載 1980)[3]
Deshmukh and Oren 2023[38] (IJSEMリストに掲載 2023)[39]
Hahn et al. 2022[40] (IJSEMリストに掲載 2022)[41]
Coenye et al. 2003[42] (IJSEMリストに掲載 2004)[43]
Babich et al. 2023[13] (IJSEMリストに掲載 2023)[14]
Babich et al. 2023[13] (IJSEMリストに掲載 2023)[14]
Rossau et al. 1987[44]
Carlier et al. 2019[45] (IJSEMリストに掲載 2019)[46]、修正 Sheu et al. 2020[47] (IJSEMリストに掲載 2021)[48]
Kämpfer et al. 2010[49] (IJSEMリストに掲載 2010)[50]、修正 Lee et al. 2013[51] (IJSEMリストに掲載 2014)[52]、修正 Mitzscherling et al. 2022[53]
Kämpfer et al. 2017[54] (IJSEMリストに掲載 2017)[55]
Kim et al. 2011[56] (IJSEMリストに掲載 2011)[57]
Kim et al. 2010[58] (IJSEMリストに掲載 2010)[59]
Chen et al. 2018[60] (IJSEMリストに掲載 2018)[61]
Vandamme et al. 1998[62] (IJSEMリストに掲載 1998)[63]
Blümel et al. 2001[64] (IJSEMリストに掲載 1998)[65]、修正 Yoon et al. 2022[66] (IJSEMリストに掲載 2018)[67]
Babich et al. 2023[13] (IJSEMリストに掲載 2023)[14]
Stolz et al. 2005[68] (IJSEMリストに掲載 2005)[69]、修正 Park et al. 2011[70] (IJSEMリストに掲載 2011)[71]
Lin et al. 2017[72] (IJSEMリストに掲載 2017)[73]
Sugimoto et al. 1984[74] (IJSEMリストに掲載 1984)[75]
Vandamme 2016[76] (IJSEMリストに掲載 2017)[77]
Ruan et al. 2024[78]
Hahn et al. 2022[40] (IJSEMリストに掲載 2022)[41]

IJSEMに未承認の属名

[編集]
  • "Denitrobacter"
Kronvall et al. 2000[79]
  • "Eiseniicola"
Aslam et al. 2010[80]
  • "Ischyrobacter"
Bechade et al. 2023[81]
  • "Schauerella"
Behrendt et al. 2024[82]

IJSEMに過去に承認されていたが現在は再分類されている属名

[編集]
  • Algicoccus
Ying et al. 2019[83] (IJSEMリストに掲載 2019)[84]
アルカリゲネス科Orrellaのシノニム
  • Eoetvoesia
Felföldi et al. 2014[85] (IJSEMリストに掲載 2014)[86]
アルカリゲネス科Eoetvoesiellaのシノニム
  • Sheuella
Hahn et al. 2022[40] (IJSEMリストに掲載 2022)[41]
アルカリゲネス科Orrellaのシノニム
  • Tetrathiobacter（テトラチオバクター属）
Ghosh et al. 2005[87] (IJSEMリストに掲載 2006)[88]
アルカリゲネス科Advenella（アドベネラ属）のシノニム
  • Verticia
Vandamme et al. 2015[89] (IJSEMリストに掲載 2015)[90]
アルカリゲネス科Verticiellaのシノニム

脚注

[編集]
  1. ^ a b J. DE LEY, P. SEGERS, K. KERSTERS, W. MANNHEIM and A. LIEVENS (01 July 1986). “Intra- and Intergeneric Similarities of the Bordetella Ribosomal Ribonucleic Acid Cistrons: Proposal for a New Family, Alcaligenaceae”. International Journal of Systematic and Evolutionary Microbiology 36 (3): 405-414. doi:10.1099/00207713-36-3-405. 
  2. ^ a b Castellani A, Chalmers AJ (1919). Manual of Tropical Medicine, 3rd ed.. Williams Wood and Co., New York 
  3. ^ a b c d V. B. D. Skerman, Vicki McGowan and P. H. A. Sneath (01 January 1980). “Approved Lists of Bacterial Names”. International Journal of Systematic and Evolutionary Microbiology 30. doi:10.1099/00207713-30-1-225. 
  4. ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T., ed (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. Springer (New York). pp. 354–361. ISBN 978-0-387-24145-6 
  5. ^ Jean P. Euzéby, Aidan C. Parte. “Family Alcaligenaceae”. List of Prokaryotic names with Standing in Nomenclature. 2024年6月23日閲覧。
  6. ^ Eiko. Yabuuchi and Ikuya. Yano (01 October 1981). “Achromobacter gen. nov. and Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) nom. rev.”. International Journal of Systematic and Evolutionary Microbiology 31 (4). doi:10.1099/00207713-31-4-477. 
  7. ^ Eiko Yabuuchi, Yoshiaki Kawamura, Yoshimasa Kosako, Takayuki Ezaki (14 November 2013). “Emendation of Genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and Proposal of Achromobacter ruhlandii (Packer and Vishniac) Comb. Nov., Achromobacter piechaudii (Kiredjian et al.) Comb. Nov., and Achromobacter xylosoxidans Subsp. denitrificans (Rüger and Tan) Comb. Nov.”. Microbiology and Immunology 42 (6): 429-438. doi:10.1111/j.1348-0421.1998.tb02306.x. PMID 9688077. 
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  13. ^ a b c d Tamara L. Babich, Denis S. Grouzdev, Diyana S. Sokolova, Tatyana P. Tourova, Andrey B. Poltaraus & Tamara N. Nazina (16 October 2022). “Genome analysis of Pollutimonas subterranea gen. nov., sp. nov. and Pollutimonas nitritireducens sp. nov., isolated from nitrate- and radionuclide-contaminated groundwater, and transfer of several Pusillimonas species into three new genera Allopusillimonas, Neopusillimonas, and Mesopusillimonas”. Antonie van Leeuwenhoek 116: 109–127. doi:10.1007/s10482-022-01781-1. PMID 36244039. 
  14. ^ a b c d Aharon Oren and Markus Göker (01 August 2023). “Validation List no. 212. Valid publication of new names and new combinations effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 73 (7): 5931. doi:10.1099/ijsem.0.005931. 
  15. ^ Luís França, Luciana Albuquerque, Claudia Sánchez, Paula Fareleira and Milton S. da Costa (01 March 2016). “Ampullimonas aquatilis gen. nov., sp. nov. isolated from bottled mineral water”. International Journal of Systematic and Evolutionary Microbiology 66 (3): 1459-1465. doi:10.1099/ijsem.0.000903. PMID 26782963. 
  16. ^ Aharon Oren and Markus Göker (10 June 2016). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 66, part 3, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (6): 2126-2128. doi:10.1099/ijsem.0.001070. 
  17. ^ Cheng-Hui Xie and Akira Yokota (01 November 2005). “Reclassification of Alcaligenes latus strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively”. International Journal of Systematic and Evolutionary Microbiology 55 (6): 2419-2425. doi:10.1099/ijs.0.63733-0. PMID 16280506. 
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  19. ^ a b =Yang Liu, Juan Du, Tao Pei, Hanqin Du, Guang-Da Feng, Honghui Zhu (November 2022). “Genome-based taxonomic classification of the closest-to-Comamonadaceae group supports a new family Sphaerotilaceae fam. nov. and taxonomic revisions”. Systematic and Applied Microbiology 45 (6): 126352. doi:10.1016/j.syapm.2022.126352. PMID 36063784. 
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  24. ^ “Notification that new names and new combinations have appeared in volume 51, part 4, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 51 (5). (01 September 2001). doi:10.1099/00207713-51-5-1621. 
  25. ^ Anne Willems, Helga Gilhaus, W Beer, Henriette Mietke, H R Gelderblom, Bärbel Burghardt, W Voigt and R Reissbrodt (01 January 2002). “Brackiella oedipodis gen. nov., sp. nov., gram-negative, oxidase-positive rods that cause endocarditis of cotton-topped tamarin (Saguinus oedipus)”. International Journal of Systematic and Evolutionary Microbiology 52 (1): 179-186. doi:10.1099/00207713-52-1-179. PMID 11837301. 
  26. ^ Anonymous (01 March 2002). “Notification that new names and new combinations have appeared in volume 52, part 1, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 52 (2): 293-295. doi:10.1099/00207713-52-2-293. 
  27. ^ Tamás Felföldi, Peter Schumann, Anikó Mentes, Zsuzsa Kéki, István Máthé and Erika M Tóth (01 March 2017). “Caenimicrobium hargitense gen. nov., sp. nov., a new member of the family Alcaligenaceae (Betaproteobacteria) isolated from activated sludge”. International Journal of Systematic and Evolutionary Microbiology 67 (3): 627-632. doi:10.1099/ijsem.0.001674. PMID 27902326. 
  28. ^ Aharon Oren and Markus Göker (01 June 2017). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 67, part 3, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (6): 1621-1622. doi:10.1099/ijsem.0.002038. 
  29. ^ Ivone Vaz-Moreira, Vânia Figueira, Ana R. Lopes, Evie De Brandt, Peter Vandamme, Olga C. Nunes and Célia M. Manaia (01 September 2011). “Candidimonas nitroreducens gen. nov., sp. nov. and Candidimonas humi sp. nov., isolated from sewage sludge compost”. International Journal of Systematic and Evolutionary Microbiology 61 (9): 2238-2246. doi:10.1099/ijs.0.021188-0. PMID 20952543. 
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  31. ^ De-Chao Zhang, Hans-Jürgen Busse, Cornelia Wieser, Hong-Can Liu, Yu-Guang Zhou, Franz Schinner and Rosa Margesin (01 September 2012). “Candidimonas bauzanensis sp. nov., isolated from soil, and emended description of the genus Candidimonas Vaz-Moreira et al. 2011”. International Journal of Systematic and Evolutionary Microbiology 62 (Pt_9): 2084-2089. doi:10.1099/ijs.0.036400-0. PMID 22039000. 
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  47. ^ Shih-Yi Sheu, Li-Chu Chen, Che-Chia Yang, Aurelien Carlier and Wen-Ming Chen (28 October 2020). “Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella”. International Journal of Systematic and Evolutionary Microbiology 70 (12): 6381-6389. doi:10.1099/ijsem.0.004538. PMID 33112223. 
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  49. ^ P. Kämpfer, E. Falsen, S. Langer, N. Lodders and H.-J. Busse (01 July 2010). “Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae”. International Journal of Systematic and Evolutionary Microbiology 60 (7): 1537-1542. doi:10.1099/ijs.0.016576-0. PMID 19684310. 
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