DDX47
Vjerovatno ATP-ovisna RNK-helikaza DDX47 jest enzim koji je kod ljudi kodiran genom DDX47.[5]
Ovaj gen kodira člana proteinske porodice DEAD-boks. Proteini iz kutije DEAD, okarakterizirani konzerviranim motivom Asp-Glu-Ala-Asp (DEAD), pretpostavljene su RNK-helikaze. Uključeni su u brojne ćelijske procese, koji uključuju promjenu sekundarne strukture RNK, kao što je iniciranje translacije, jedarne i mitohondrijske prerade i sklapanja ribosoma i splajsosoma. Na osnovu njihovih obrazaca distribucije, vjeruje se da su neki članovi ove porodice uključeni u embriogenezu, spermatogenezu i ćelijski rast i diobu. Protein kodiran ovim genom može se kretati između jedra i citoplazme, te ima aktivnost ATPaza neovisnih o RNK. Za ovaj gen su pronađene dvije alternativno prerađene varijante transkripta koje kodiraju različite izoforme.[5]
Aminokiselinska sekvenca
[uredi | uredi izvor]Dužina polipeptidnog lanca je 455 aminokiselina, a molekulska težina 50.647 Da.[6]
| 10 | 20 | 30 | 40 | 50 | ||||
|---|---|---|---|---|---|---|---|---|
| MAAPEEHDSP | TEASQPIVEE | EETKTFKDLG | VTDVLCEACD | QLGWTKPTKI | ||||
| QIEAIPLALQ | GRDIIGLAET | GSGKTGAFAL | PILNALLETP | QRLFALVLTP | ||||
| TRELAFQISE | QFEALGSSIG | VQSAVIVGGI | DSMSQSLALA | KKPHIIIATP | ||||
| GRLIDHLENT | KGFNLRALKY | LVMDEADRIL | NMDFETEVDK | ILKVIPRDRK | ||||
| TFLFSATMTK | KVQKLQRAAL | KNPVKCAVSS | KYQTVEKLQQ | YYIFIPSKFK | ||||
| DTYLVYILNE | LAGNSFMIFC | STCNNTQRTA | LLLRNLGFTA | IPLHGQMSQS | ||||
| KRLGSLNKFK | AKARSILLAT | DVASRGLDIP | HVDVVVNFDI | PTHSKDYIHR | ||||
| VGRTARAGRS | GKAITFVTQY | DVELFQRIEH | LIGKKLPGFP | TQDDEVMMLT | ||||
| ERVAEAQRFA | RMELREHGEK | KKRSREDAGD | NDDTEGAIGV | RNKVAGGKMK | ||||
| KRKGR |
- Simboli
C: Cistein
D: Asparaginska kiselina
E: Glutaminska kiselina
F: Fenilalanin
G: Glicin
H: Histidin
I: Izoleucin
K: Lizin
L: Leucin
M: Metionin
N: Asparagin
P: Prolin
Q: Glutamin
R: Arginin
S: Serin
T: Treonin
V: Valin
W: Triptofan
Y: Tirozin
Reference
[uredi | uredi izvor]- ^ a b c GRCh38: Ensembl release 89: ENSG00000213782 - Ensembl, maj 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000030204 - Ensembl, maj 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ a b "Entrez Gene: DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47".
- ^ "UniProt, Q9H0S4". Pristupljeno 8. 8. 2021.
Dopunska literatura
[uredi | uredi izvor]- Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
- Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
- Doorbar J, Elston RC, Napthine S, et al. (2000). "The E1∧E4 Protein of Human Papillomavirus Type 16 Associates with a Putative RNA Helicase through Sequences in Its C Terminus". J. Virol. 74 (21): 10081–95. doi:10.1128/JVI.74.21.10081-10095.2000. PMC 102047. PMID 11024137.
- Hartley JL, Temple GF, Brasch MA (2001). "DNA Cloning Using In Vitro Site-Specific Recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
- Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
- Simpson JC, Wellenreuther R, Poustka A, et al. (2001). "Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing". EMBO Rep. 1 (3): 287–92. doi:10.1093/embo-reports/kvd058. PMC 1083732. PMID 11256614.
- Scherl A, Couté Y, Déon C, et al. (2003). "Functional Proteomic Analysis of Human Nucleolus". Mol. Biol. Cell. 13 (11): 4100–9. doi:10.1091/mbc.E02-05-0271. PMC 133617. PMID 12429849.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Regard JB, Scheek S, Borbiev T, et al. (2004). "Verge: a novel vascular early response gene". J. Neurosci. 24 (16): 4092–103. doi:10.1523/JNEUROSCI.4252-03.2004. PMC 6729408. PMID 15102925.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
- Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to Biology: A Functional Genomics Pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
- Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
- Lee JH, Rho SB, Chun T (2005). "GABAA receptor-associated protein (GABARAP) induces apoptosis by interacting with DEAD (Asp-Glu-Ala-Asp/His) box polypeptide 47 (DDX 47)". Biotechnol. Lett. 27 (9): 623–8. doi:10.1007/s10529-005-3628-2. PMID 15977068. S2CID 19960329.
- Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.